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INTERNATIONAL JOURNAL OF SCIENTIFIC DEVELOPMENT AND RESEARCH International Peer Reviewed & Refereed Journals, Open Access Journal ISSN Approved Journal No: 2455-2631 | Impact factor: 8.15 | ESTD Year: 2016 open access , Peer-reviewed, and Refereed Journals, Impact factor 8.15 |
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| Paper Title: | In Silico Analysis of Secondary Metabolite Biosynthesis Clusters in the Genome of Panicum virgatum |
| Authors Name: | Supratik Adhikary , Dr. Aditi Nayak |
| Unique Id: | IJSDR2307079 |
| Published In: | Volume 8 Issue 7, July-2023 |
| Abstract: | A biosynthetic gene cluster (BGC) is a group of genes in a genome that collectively encode the enzymes responsible for producing a specific natural product, such as a secondary metabolite or a bioactive compound with diverse biological activities, including antibiotics, antifungals, antiviral agents. Understanding the structure and function of these biosynthetic gene clusters is important for developing new pharmacological compounds. By studying these clusters, it would be beneficial in identifying the potential targets for drug development and strategies to prevent the spread of antibiotic resistance. In this study, we identified biosynthetic gene clusters in Panicum virgatum. The plant possess various medicinal properties. Using KNApSAck database, we identified the secondary metabolites present in the plant. PlantiSMASH is a bioinformatics tool that can be used to identify biosynthetic gene clusters (BGCs) in plant genomes. Using PlantiSMASH, BGCs in Panicum virgatum genomes were predicted. This study gives an insights into the secondary metabolism of Panicum virgatum, and identify potential targets for genetic engineering to improve the nutritional value or other properties of the plant. Hence, the Biosynthetic gene clusters in Panicum virgatum offer a promising avenue for improving the productivity, nutritional value, and health benefits. |
| Keywords: | Biosynthetic Gene Cluster (BGC), Secondary metabolites, Panicum virgatum, PlantiSMASH, KNApSAck database |
| Cite Article: | "In Silico Analysis of Secondary Metabolite Biosynthesis Clusters in the Genome of Panicum virgatum", International Journal of Science & Engineering Development Research (www.ijsdr.org), ISSN:2455-2631, Vol.8, Issue 7, page no.552 - 563, July-2023, Available :http://www.ijsdr.org/papers/IJSDR2307079.pdf |
| Downloads: | 000338536 |
| Publication Details: | Published Paper ID: IJSDR2307079 Registration ID:207742 Published In: Volume 8 Issue 7, July-2023 DOI (Digital Object Identifier): https://doi.org/10.5281/zenodo.8374134 Page No: 552 - 563 Publisher: IJSDR | www.ijsdr.org ISSN Number: 2455-2631 |
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